- Company Name
- Stark Pharma Solutions Inc
- Job Title
- Data Integration Scientist
- Job Description
-
Job title: Data Integration Scientist
Role Summary: Design and build a scalable, central data management system for large‑scale omics datasets, enabling ingestion, curation, storage, discovery, and reuse across research teams.
Expactations: Deliver end‑to‑end data pipelines, metadata standards, and a web portal; ensure data governance, security, and compliance; collaborate with IT, research, and cross‑functional stakeholders.
Key Responsibilities:
- Architect and implement scalable ingestion, curation, and storage pipelines for bulk/single‑cell RNA‑seq, spatial omics, CyTOF, etc.
- Build and maintain a web‑based data catalog/portal (e.g., R‑Shiny) for dataset discovery, metadata browsing, and QC visualization.
- Define and enforce metadata schemas, ontologies, and FAIR principles to guarantee consistency and interoperability.
- Implement access controls, permission systems, and security measures aligned with compliance standards.
- Integrate the system with existing compute and storage infrastructures (cloud/HPC).
- Process and organize raw biological data for internal use.
- Version control code and pipelines using Git; maintain CI/CD practices for pipeline updates.
Required Skills:
- Proficiency in Python, R, and SQL/PostgreSQL (and familiarity with MongoDB).
- Hands‑on experience building and maintaining bioinformatics data pipelines (Nextflow, Snakemake).
- Knowledge of metadata models, data provenance, and FAIR data principles.
- Ability to develop web applications or dashboards (R‑Shiny).
- Experience with cloud or HPC environments (AWS, GCP, on‑prem).
- Strong collaboration skills across cross‑functional teams.
Required Education & Certifications:
- BS (≥5 years experience) or MS (≤3 years experience) in Bioinformatics, Computational Biology, Data Science, Computer Science, or related field.
- Relevant certifications in data engineering, cloud services, or bioinformatics tools are advantageous but not mandatory.
Massachusetts, United states
Hybrid
Mid level
17-10-2025